image registration toolkit niftyreg Search Results


niftyreg package  (SourceForge net)
90
SourceForge net niftyreg package
Niftyreg Package, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/niftyreg package/product/SourceForge net
Average 90 stars, based on 1 article reviews
niftyreg package - by Bioz Stars, 2026-04
90/100 stars
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image registration toolkit niftyreg  (SourceForge net)
90
SourceForge net image registration toolkit niftyreg
Compared methods with their corresponding addresses.
Image Registration Toolkit Niftyreg, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/image registration toolkit niftyreg/product/SourceForge net
Average 90 stars, based on 1 article reviews
image registration toolkit niftyreg - by Bioz Stars, 2026-04
90/100 stars
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niftyreg  (Aladin Enterprises Inc)
90
Aladin Enterprises Inc niftyreg
Compared methods with their corresponding addresses.
Niftyreg, supplied by Aladin Enterprises Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/niftyreg/product/Aladin Enterprises Inc
Average 90 stars, based on 1 article reviews
niftyreg - by Bioz Stars, 2026-04
90/100 stars
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niftyseg  (SourceForge net)
90
SourceForge net niftyseg
Compared methods with their corresponding addresses.
Niftyseg, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/niftyseg/product/SourceForge net
Average 90 stars, based on 1 article reviews
niftyseg - by Bioz Stars, 2026-04
90/100 stars
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reg_aladin  (Aladin Enterprises Inc)
90
Aladin Enterprises Inc reg_aladin
Compared methods with their corresponding addresses.
Reg Aladin, supplied by Aladin Enterprises Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/reg_aladin/product/Aladin Enterprises Inc
Average 90 stars, based on 1 article reviews
reg_aladin - by Bioz Stars, 2026-04
90/100 stars
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matlab/spm  (MathWorks Inc)
90
MathWorks Inc matlab/spm
Our <t>SkullStrip</t> program, skullstripper.py, takes a reference template image of a whole head together with and its respective mask (yellow, left panels) and warps the template mask to fit a new, target head image (gray, middle panel). Output of the computer-generated mask and its overlay on the new target image shows the precise fit this process produces (red, right panels).
Matlab/Spm, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/matlab/spm/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
matlab/spm - by Bioz Stars, 2026-04
90/100 stars
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reg aladin rigid affine transformation algorithm  (Aladin Enterprises Inc)
90
Aladin Enterprises Inc reg aladin rigid affine transformation algorithm
Our <t>SkullStrip</t> program, skullstripper.py, takes a reference template image of a whole head together with and its respective mask (yellow, left panels) and warps the template mask to fit a new, target head image (gray, middle panel). Output of the computer-generated mask and its overlay on the new target image shows the precise fit this process produces (red, right panels).
Reg Aladin Rigid Affine Transformation Algorithm, supplied by Aladin Enterprises Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/reg aladin rigid affine transformation algorithm/product/Aladin Enterprises Inc
Average 90 stars, based on 1 article reviews
reg aladin rigid affine transformation algorithm - by Bioz Stars, 2026-04
90/100 stars
  Buy from Supplier
niftyreg software  (Johns Hopkins HealthCare)
90
Johns Hopkins HealthCare niftyreg software
Our <t>SkullStrip</t> program, skullstripper.py, takes a reference template image of a whole head together with and its respective mask (yellow, left panels) and warps the template mask to fit a new, target head image (gray, middle panel). Output of the computer-generated mask and its overlay on the new target image shows the precise fit this process produces (red, right panels).
Niftyreg Software, supplied by Johns Hopkins HealthCare, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/niftyreg software/product/Johns Hopkins HealthCare
Average 90 stars, based on 1 article reviews
niftyreg software - by Bioz Stars, 2026-04
90/100 stars
  Buy from Supplier
non-linear registration  (SourceForge net)
90
SourceForge net non-linear registration
Our <t>SkullStrip</t> program, skullstripper.py, takes a reference template image of a whole head together with and its respective mask (yellow, left panels) and warps the template mask to fit a new, target head image (gray, middle panel). Output of the computer-generated mask and its overlay on the new target image shows the precise fit this process produces (red, right panels).
Non Linear Registration, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/non-linear registration/product/SourceForge net
Average 90 stars, based on 1 article reviews
non-linear registration - by Bioz Stars, 2026-04
90/100 stars
  Buy from Supplier
niftyrec  (MathWorks Inc)
90
MathWorks Inc niftyrec
Our <t>SkullStrip</t> program, skullstripper.py, takes a reference template image of a whole head together with and its respective mask (yellow, left panels) and warps the template mask to fit a new, target head image (gray, middle panel). Output of the computer-generated mask and its overlay on the new target image shows the precise fit this process produces (red, right panels).
Niftyrec, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/niftyrec/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
niftyrec - by Bioz Stars, 2026-04
90/100 stars
  Buy from Supplier
nifty-seg open source implementation  (SourceForge net)
90
SourceForge net nifty-seg open source implementation
Our <t>SkullStrip</t> program, skullstripper.py, takes a reference template image of a whole head together with and its respective mask (yellow, left panels) and warps the template mask to fit a new, target head image (gray, middle panel). Output of the computer-generated mask and its overlay on the new target image shows the precise fit this process produces (red, right panels).
Nifty Seg Open Source Implementation, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/nifty-seg open source implementation/product/SourceForge net
Average 90 stars, based on 1 article reviews
nifty-seg open source implementation - by Bioz Stars, 2026-04
90/100 stars
  Buy from Supplier

Image Search Results


Compared methods with their corresponding addresses.

Journal: Scientific Reports

Article Title: Accurate Learning with Few Atlases (ALFA): an algorithm for MRI neonatal brain extraction and comparison with 11 publicly available methods

doi: 10.1038/srep23470

Figure Lengend Snippet: Compared methods with their corresponding addresses.

Article Snippet: All registration steps were carried out using the open-source image registration toolkit NiftyReg ( https://sourceforge.net/projects/niftyreg ), using default settings.

Techniques:

Our SkullStrip program, skullstripper.py, takes a reference template image of a whole head together with and its respective mask (yellow, left panels) and warps the template mask to fit a new, target head image (gray, middle panel). Output of the computer-generated mask and its overlay on the new target image shows the precise fit this process produces (red, right panels).

Journal: Current protocols in molecular biology

Article Title: Current Protocols in Molecular Biology For Chapter 29 Ms#CP-16-0221 Automated computational processing of 3D MR images of mouse brain for phenotyping of living animals

doi: 10.1002/cpmb.40

Figure Lengend Snippet: Our SkullStrip program, skullstripper.py, takes a reference template image of a whole head together with and its respective mask (yellow, left panels) and warps the template mask to fit a new, target head image (gray, middle panel). Output of the computer-generated mask and its overlay on the new target image shows the precise fit this process produces (red, right panels).

Article Snippet: To do this, we can use either MATLAB/SPM in batch or our NiftyReg SkullStrip program for individual animals one at a time, in the following ways.

Techniques: Generated

This shows the results of the SkullStrip program, skullstripper.py, to mask the extra-meningeal tissue in the whole head image. This is the final results after following steps A1-A8. (A) A new whole-head image. (B) The mask generated by skullstripper.py and thresholded to produce a black-white image derived from the reference image and reference mask and warped to fit the image in (A). (C) Application of the mask to the whole head image cause the non-brain tissues to disappear from the image because they are masked out. This resultant image is shown here as a sincle axial slice. However, the mask must fit in all three orthogonal dimensions and must be checked in a 3D viewer in each coronal, axial, and sagittal slice across the whole brain.

Journal: Current protocols in molecular biology

Article Title: Current Protocols in Molecular Biology For Chapter 29 Ms#CP-16-0221 Automated computational processing of 3D MR images of mouse brain for phenotyping of living animals

doi: 10.1002/cpmb.40

Figure Lengend Snippet: This shows the results of the SkullStrip program, skullstripper.py, to mask the extra-meningeal tissue in the whole head image. This is the final results after following steps A1-A8. (A) A new whole-head image. (B) The mask generated by skullstripper.py and thresholded to produce a black-white image derived from the reference image and reference mask and warped to fit the image in (A). (C) Application of the mask to the whole head image cause the non-brain tissues to disappear from the image because they are masked out. This resultant image is shown here as a sincle axial slice. However, the mask must fit in all three orthogonal dimensions and must be checked in a 3D viewer in each coronal, axial, and sagittal slice across the whole brain.

Article Snippet: To do this, we can use either MATLAB/SPM in batch or our NiftyReg SkullStrip program for individual animals one at a time, in the following ways.

Techniques: Generated, Derivative Assay